Fitness data for PP_4163 in Pseudomonas putida KT2440

conserved exported protein of unknown function
SEED: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
pH Growth at pH7 and (C) D-Glucose -1.3 -2.8 compare
phage P. putida PUT 7 MOI 1 -1.2 -3.0 compare
nitrogen source NAG (N); with MOPS -1.1 -1.4 compare
temperature shift Temperature shift 30_to_21; with MOPS -1.0 -2.4 compare
nitrogen source D-2-Aminobutyric (N) -1.0 -2.5 compare
pH pH 7 -0.9 -2.4 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.9 -2.4 compare
phage P. putida Sci small MOI 0.1 -0.9 -1.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.9 -1.8 compare
phage P. putida South MOI 10 -0.9 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9 -2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.9 -2.3 compare
nitrogen source Urea (N); with MOPS -0.7 -1.3 compare
nitrogen source D-2-Aminobutyric (N) -0.7 -1.5 compare
nitrogen source nitrogen source nitrate 5mM +0.7 +2.7 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.7 +3.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.8 +2.6 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. +0.8 +3.1 compare
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant +0.9 +3.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +2.7 compare