Fitness data for PP_4140 in Pseudomonas putida KT2440

lysine decarboxylase
SEED: Lysine decarboxylase, inducible (EC 4.1.1.18)
KEGG: lysine decarboxylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.5 -2.0 compare
pH Growth at pH6 and (C) D-Glucose -0.5 -1.7 compare
phage P. put South MOI 1 -0.4 -2.4 compare
phage moi 100 Time6-phageFRS -0.4 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -1.8 compare
pH Valerolactone (C) pH 6.5 -0.4 -2.0 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.4 -1.8 compare
no phage control Time6-nophage -0.3 -2.2 compare
pH Growth at pH8 and (C) D-Glucose -0.3 -1.5 compare
nitrogen source Propiolactam (N) -0.3 -2.0 compare
carbon source ferulate (C); with MOPS -0.3 -1.4 compare
microaerobic m9 microaerobic M9 +0.3 +2.0 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.3 compare
carbon source D-Lysine 10 mM (C) +0.4 +2.3 compare
pH Growth at pH7 and (C) D-Glucose +0.4 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.6 compare
carbon source ferulate (C); with MOPS +0.4 +2.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +2.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.7 compare