Fitness data for PP_4055 in Pseudomonas putida KT2440

Glycogen debranching enzyme
SEED: Glycogen debranching enzyme (EC 3.2.1.-)
KEGG: glycogen operon protein GlgX

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.2 -3.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.1 -5.7 compare
carbon source 1,3-Hexanediol (C) -1.0 -6.9 compare
stress Growth with Chloride 500 mM -0.9 -5.8 compare
stress Growth with Chloride 500 mM -0.8 -5.1 compare
reactor_pregrowth Adaptation in M9 media timecourse 4; day 3 -0.8 -6.0 compare
stress Growth with Chloride 500 mM -0.8 -4.8 compare
carbon source 1,3-Hexanediol (C) -0.7 -5.2 compare
nitrogen source DL-2-Aminobutyric (N) -0.7 -5.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -3.6 compare
stress Growth with Chloride 500 mM; with MOPS -0.7 -4.0 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.7 -3.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -4.1 compare
stress Growth with Chloride 500 mM; with MOPS -0.6 -4.1 compare
nitrogen source 2,6-diaminopimelic (N) +0.6 +3.2 compare
nitrogen source 6-aminocaproic (N) +0.6 +4.9 compare
nitrogen source 2,6-diaminopimelic (N) +0.6 +3.7 compare
nitrogen source 2,6-diaminopimelic (N) +0.6 +5.4 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.7 +4.7 compare
nitrogen source Hydantoin (N) +0.7 +4.8 compare