Fitness data for PP_3978 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
phage P. putida Sci Big MOI 0.1 -1.2 -2.0 compare
nitrogen source nitrate (N) -1.2 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.1 -3.3 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -1.0 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9 -2.2 compare
nitrogen source 2,6-diaminopimelic (N) -0.8 -1.4 compare
pH Growth at pH7 and (C) D-Glucose -0.8 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 -1.9 compare
pH Growth at pH8 and (C) D-Glucose -0.8 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 -2.8 compare
stress Growth with Chloride 500 mM; with MOPS +0.7 +2.4 compare
pH Growth at pH9 and (C) Trisodium citrate +0.7 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.7 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +2.1 compare
pH Growth at pH9 and (C) Trisodium citrate +0.8 +2.5 compare
carbon source carbon source 4-vinylphenol 0.01 mM +0.8 +2.4 compare
phage PUT 8 MOI 1 +0.9 +1.3 compare
carbon source carbon source D-Glucose 55.5 mM +0.9 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +2.1 compare
carbon source Valeric (C) +1.2 +3.4 compare