Fitness data for PP_3934 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Cyn operon transcriptional activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen source 2,6-diaminopimelic (N) -1.1 -3.5 compare
pH Growth at pH6 and (C) D-Glucose -0.9 -1.4 compare
phage P. putida PUT 7 MOI 1 -0.8 -2.2 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.7 -2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.7 compare
stress R2A with Fusaric 240 ug/mL -0.7 -3.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -1.8 compare
nitrogen source Urea (N); with MOPS -0.6 -1.3 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.6 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.4 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 -2.3 compare
carbon source carbon source 4-vinylphenol 0.01 mM +0.5 +1.6 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.6 +2.3 compare
pH pH 9 +0.6 +1.7 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.6 +2.1 compare
pH pH 7 +0.6 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.7 compare
pH Growth at pH6 and (C) Trisodium citrate +0.7 +2.4 compare