Fitness data for PP_3929 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.2 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.0 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.0 -1.8 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -1.0 -1.7 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.9 -2.5 compare
nitrogen source Ammonium chloride (N); with MOPS -0.9 -2.1 compare
carbon source Lignin Monomers (C) -0.9 -3.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -1.7 compare
dilutelb LB 0.1x with 55.5 mM D-Glucose -0.8 -2.9 compare
carbon source Succinic Acid (C) -0.8 -2.3 compare
pH Growth at pH7 and (C) Trisodium citrate -0.8 -1.2 compare
stress Growth with Chloride 500 mM; with MOPS -0.8 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 -1.8 compare
nitrogen source 2,6-diaminopimelic (N) +0.7 +1.5 compare
temperature Growth at 25C +0.8 +1.8 compare
carbon source D-Glucose (C) +0.8 +1.6 compare
nitrogen source nitrogen source nitrate 20mM +0.8 +2.4 compare
carbon source Tween 20 (C) +0.8 +2.2 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 +0.9 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +1.8 compare