Fitness data for PP_3928 in Pseudomonas putida KT2440

conserved exported protein of unknown function
SEED: putative periplasmic protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.1 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -2.7 compare
nitrogen source NAG (N); with MOPS -0.8 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.8 -2.6 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.8 -2.6 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.7 -2.7 compare
carbon source 2-Methylbutanoic (C) -0.7 -1.8 compare
nitrogen source Propandiamine (N) -0.6 -1.9 compare
carbon source Myristic (C) -0.6 -1.9 compare
phage P. putida South MOI 10 -0.6 -2.0 compare
carbon source carbon source D-Glucose 55.5 mM -0.6 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -1.7 compare
carbon source D-Glucose (C); with MOPS +0.5 +1.4 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.5 +2.5 compare
pH Growth at pH6 and (C) Trisodium citrate +0.5 +1.9 compare
micoeukaryotes C.elegans, mixed culture-2 +0.6 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.7 +1.6 compare
pH Growth at pH7 and (C) Trisodium citrate +0.7 +1.8 compare
temperature Growth at 25C +0.9 +3.9 compare