Fitness data for PP_3904 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.2)


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group condition fitness t score  
pH Growth at pH6 and (C) D-Glucose -2.1 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -2.0 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.8 -3.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.8 -1.9 compare
pH Growth at pH6 and (C) D-Glucose -1.6 -0.9 compare
carbon source 1,3-Butandiol (C) -1.5 -1.5 compare
nitrogen source D-2-Aminobutyric (N) -1.5 -0.9 compare
pH Growth at pH9 and (C) D-Glucose -1.4 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -1.1 compare
phage P. put South MOI 1 -1.4 -3.9 compare
temperature shift Temperature shift 30_to_34; with MOPS -1.3 -2.4 compare
temperature shift Temperature shift 30_to_21; with MOPS -1.3 -2.2 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -1.3 -3.0 compare
stress R2A with Fusaric 480 ug/mL -1.3 -2.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.3 -1.1 compare
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -1.2 -4.0 compare
carbon source 4-Methyl-2-oxopentanoic (C) -1.2 -2.0 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.2 -3.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.2 +3.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.6 +1.6 compare