Fitness data for PP_3893 in Pseudomonas putida KT2440

putative Phage DNA helicase
SEED: Replicative DNA helicase (EC 3.6.1.-)
KEGG: replicative DNA helicase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.4 -3.3 compare
temperature Growth at 10C -1.2 -3.1 compare
nitrogen source no extra (N); with MOPS -1.1 -3.0 compare
temperature Growth at 10C; with MOPS -1.1 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.9 -2.9 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -4.1 compare
temperature Growth at 10C; with MOPS -0.8 -2.4 compare
pH Growth at pH6 and (C) Trisodium citrate -0.8 -2.3 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.8 -2.3 compare
pH pH 7 -0.8 -2.8 compare
carbon source ferulate (C); with MOPS -0.8 -2.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.7 compare
carbon source D-Glucose (C) -0.8 -1.8 compare
temperature Growth at 10C; with MOPS -0.8 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.7 -2.4 compare
temperature shift Temperature shift 30_to_4 -0.7 -2.9 compare
nitrogen source nitrate (N) -0.7 -2.3 compare
nitrogen source 2,6-diaminopimelic (N) +0.9 +2.5 compare