Fitness data for PP_3879 in Pseudomonas putida KT2440

Phage portal protein, HK97 family
SEED: Phage portal protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
pH Growth at pH7 and (C) Trisodium citrate -0.6 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -2.1 compare
pH Growth at pH6 and (C) D-Glucose -0.5 -2.2 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -0.5 -2.2 compare
phage P. putida Sci small MOI 0.1 -0.4 -1.5 compare
carbon source L-Leucine (C) -0.4 -3.0 compare
nitrogen source Urea (N); with MOPS -0.4 -2.1 compare
carbon source Nonanoic (C) -0.4 -2.1 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.4 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.5 compare
temperature Growth at 25C -0.4 -1.6 compare
pH pH 4 -0.3 -1.7 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.3 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.3 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.7 compare
carbon source 2-Methylbutanoic (C) +0.3 +2.1 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.4 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.9 compare