Fitness data for PP_3813 in Pseudomonas putida KT2440

3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
SEED: 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25)
KEGG: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
temperature shift Temperature shift 10_to_30; with MOPS -0.7 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 -1.9 compare
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -0.7 -2.3 compare
temperature shift Temperature shift 30_to_34; with MOPS -0.7 -1.8 compare
phage P. putida Sci small MOI 0.1 -0.6 -1.7 compare
pH pH 5 -0.6 -2.6 compare
carbon source carbon source D-Glucose 55.5 mM -0.6 -1.8 compare
stress Isobutyl alcohol 0.6 vol% -0.6 -2.9 compare
phage P. putida South MOI 10 -0.6 -2.0 compare
stress R2A with Fusaric 240 ug/mL -0.6 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 -2.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -1.6 compare
pH pH 6 -0.5 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -1.2 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +2.5 compare
carbon source D-Glucose (C) +0.6 +2.6 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.6 +2.9 compare
nitrogen source D-2-Aminobutyric (N) +0.9 +2.0 compare