Fitness data for PP_3798 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: FIG139991: Putative thiamine pyrophosphate-requiring enzyme

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -2.3 -4.2 compare
pH pH 9 -1.7 -3.7 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.6 -3.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.3 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3 -1.9 compare
pH pH 8 -1.2 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -2.3 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -1.1 -2.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -2.5 compare
pH Growth at pH7 and (C) Trisodium citrate -1.0 -1.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.0 -2.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 -2.0 compare
nitrogen source Ammonium chloride (N); with MOPS -0.9 -2.7 compare
carbon source D-Glucose (C); with MOPS -0.9 -1.7 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.8 -2.4 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.8 -1.9 compare
carbon source Myristic (C) -0.8 -3.3 compare
reactor_pregrowth Adaptation in M9 media timecourse 1; day 3 -0.8 -2.3 compare
nitrogen source Propandiamine (N) +0.9 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +2.6 compare