Fitness data for PP_3794 in Pseudomonas putida KT2440

periplasmic murein D-alanyl-D-alanine endopeptidase
SEED: Murein-DD-endopeptidase (EC 3.4.99.-)
KEGG: D-alanyl-D-alanine endopeptidase (penicillin-binding protein 7)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.4 -6.0 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.3 -7.9 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -1.1 -5.7 compare
carbon source D-Glucose (C) -0.6 -2.2 compare
pH pH 6 -0.5 -2.3 compare
phage P. putida South MOI 10 -0.5 -2.8 compare
pH pH 9 -0.5 -2.0 compare
pH pH 4 -0.5 -2.2 compare
pH pH 5 -0.5 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.4 -2.5 compare
carbon source D-Glucose (C) -0.4 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -2.1 compare
pH Growth at pH9 and (C) Trisodium citrate -0.4 -2.1 compare
stress R2A with Fusaric 480 ug/mL +0.4 +2.8 compare
temperature Growth at 25C; with MOPS +0.4 +2.7 compare
carbon source D-Fructose (C) +0.4 +3.1 compare
carbon source 2,3-Butanediol (C) +0.5 +2.7 compare
nitrogen source L-Leucine (N) +0.5 +4.3 compare
r2a control R2A control +0.6 +4.1 compare
carbon source ferulate (C); with MOPS +0.7 +3.2 compare