Fitness data for PP_3764 in Pseudomonas putida KT2440

outer-membrane porin D
SEED: Phenylacetic acid-specific porin; hydroxycinnamate specific porine

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -0.4 -2.1 compare
phage P. put PUT 10 MOI 10 -0.4 -2.6 compare
pH Growth at pH7 and (C) D-Glucose -0.4 -2.1 compare
temperature Growth at 30C; with MOPS -0.4 -1.7 compare
stress Growth with Chloride 500 mM; with MOPS -0.3 -2.1 compare
phage P. putida Sci small MOI 0.1 -0.3 -1.6 compare
stress R2A with Fusaric 480 ug/mL -0.3 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.3 -1.6 compare
carbon source L-Leucine (C) -0.3 -1.9 compare
pH Growth at pH6 and (C) Trisodium citrate -0.3 -1.8 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.3 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3 +1.4 compare
phage PUT8 MOI 10 +0.3 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.3 compare
carbon source Delta-Decalactone (C) +0.3 +2.3 compare
carbon source ferulate (C); with MOPS +0.3 +1.7 compare
carbon source carbon source 3-O-methyl-glucose 10 mM +0.4 +2.3 compare
nitrogen source 2,6-diaminopimelic (N) +0.5 +3.0 compare