Fitness data for PP_3744 in Pseudomonas putida KT2440

transcriptional dual regulator GlcC-Glycolate
SEED: Glycolate utilization operon transcriptional activator GlcC
KEGG: GntR family transcriptional regulator, glc operon transcriptional activator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.6 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -1.8 compare
carbon source Crotonic (C) -0.6 -2.0 compare
phage P. putida PUT 7 MOI 1 -0.5 -1.2 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.5 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.5 +1.9 compare
temperature Growth at 25C +0.5 +1.4 compare
pH pH 8 +0.6 +1.8 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.6 +1.7 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.6 +2.0 compare
nitrogen source nitrogen source nitrite 1mM +0.6 +2.1 compare
carbon source Valerolactone (C) +0.6 +2.2 compare
nitrogen source 2,6-diaminopimelic (N) +0.6 +2.1 compare
pH pH 6 +0.7 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.7 +2.6 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.7 +2.1 compare
carbon source carbon source 2-Deoxy-D-glucose 10 mM +0.7 +2.1 compare
pH pH 7 +0.8 +2.9 compare
carbon source carbon source Glycerol 108.6 mM +0.9 +3.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.0 +1.6 compare