Fitness data for PP_3715 in Pseudomonas putida KT2440

Muconate cycloisomerase 1
SEED: Muconate cycloisomerase (EC 5.5.1.1)
KEGG: muconate cycloisomerase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.2)


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group condition fitness t score  
carbon source benzoic (C) -6.9 -4.7 compare
carbon source benzoic (C) -5.7 -6.5 compare
carbon source benzoic (C) -3.0 -4.9 compare
no stress control Growth with no stress -2.6 -3.4 compare
temperature shift Temperature shift 10_to_25; with MOPS -2.3 -2.9 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -2.0 -2.3 compare
pH Growth at pH6 and (C) Trisodium citrate -2.0 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.8 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.8 -1.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -1.8 -2.7 compare
temperature shift Temperature shift 30_to_25 -1.6 -2.3 compare
temperature shift Temperature shift 10_to_25; with MOPS -1.6 -3.1 compare
nitrogen source no extra (N); with MOPS -1.5 -2.6 compare
pH Growth at pH6 and (C) D-Glucose -1.4 -1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.4 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.3 -2.8 compare
nitrogen source D-2-Aminobutyric (N) -1.3 -2.8 compare
nitrogen source nitrate (N) -1.3 -2.9 compare
phage PUT 8 MOI 1 -1.3 -2.2 compare
phage P. putida Sci Big MOI 0.1 -1.2 -1.5 compare