Fitness data for PP_3678 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source L-Leucine (C) -0.6 -2.1 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.6 -2.1 compare
nitrogen source nitrogen source nitrite 0.5mM -0.6 -2.1 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.5 -3.0 compare
carbon source L-Lysine (C) -0.5 -3.1 compare
carbon source L-Alanine (C) -0.5 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -1.2 compare
pH Valerolactone (C) pH 6.5 -0.5 -1.9 compare
carbon source Glutaric (C) -0.5 -2.5 compare
nitrogen source nitrite (N) +0.5 +3.7 compare
phage P. putida PUT 7 MOI 1 +0.5 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.6 +2.7 compare
carbon source Trisodium citrate (C) +0.6 +2.0 compare
carbon source Tween 20 (C) +0.6 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.9 compare
phage P. putida Sci small MOI 0.1 +0.7 +2.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +2.7 compare
phage PUT8 MOI 0.1 +0.7 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +2.9 compare
phage PUT8 MOI 10 +0.9 +5.3 compare