Fitness data for PP_3648 in Pseudomonas putida KT2440

Carboxymuconolactone decarboxylase family protein
SEED: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
KEGG: 4-carboxymuconolactone decarboxylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.5 -3.1 compare
carbon source L-Lysine (C) -1.4 -2.3 compare
carbon source 4-Aminobutyric 10 mM (C) -1.0 -2.0 compare
nitrogen source nitrogen source nitrite 0.5mM -1.0 -2.2 compare
carbon source D-Glucose (C) -1.0 -2.3 compare
no stress control Growth with no stress -1.0 -2.2 compare
nitrogen source NAG (N); with MOPS -1.0 -1.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.5 compare
stress R2A with Fusaric 240 ug/mL -0.8 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -2.3 compare
stress Growth with Chloride 200 mM; with MOPS -0.7 -1.4 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO. -0.7 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -1.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.4 compare
carbon source L-Phenylalanine 5 mM (C) -0.7 -2.1 compare
phage PUT8 MOI 10 -0.7 -2.5 compare
phage P. putida Missley MOI 0.1 +0.7 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +1.2 compare
phage P. putida Sci Big MOI 0.1 +0.9 +1.5 compare