Fitness data for PP_3562 in Pseudomonas putida KT2440

conserved exported protein of unknown function
SEED: Cell wall hydrolyses involved in spore germination

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -0.8 -1.5 compare
nitrogen source 2,6-diaminopimelic (N) -0.8 -2.0 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.6 -1.6 compare
carbon source Nonanoic (C) -0.6 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.6 -2.4 compare
carbon source Glycerol (C) -0.6 -2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.6 -1.9 compare
carbon source Myristic (C) -0.6 -1.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.2 compare
carbon source Valerolactone (C) -0.6 -1.5 compare
carbon source ferulate (C); with MOPS -0.5 -1.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.7 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.5 -1.7 compare
carbon source 5-Aminovaleric 10 mM (C) +0.5 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +1.5 compare
pH Growth at pH9 and (C) D-Glucose +0.6 +2.5 compare
carbon source L-Lysine (C) +0.7 +3.6 compare
pH Growth at pH7 and (C) D-Glucose +0.8 +2.5 compare
nitrogen source D-2-Aminobutyric (N) +1.0 +3.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +1.6 compare