Fitness data for PP_3558 in Pseudomonas putida KT2440

putative Amino acid transporter, periplasmic amino acid-binding protein
SEED: Histidine transporter, periplasmic histidine-binding protein
KEGG: glycine betaine/proline transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source butyrate (C) -0.6 -2.9 compare
stress R2A with Fusaric 240 ug/mL -0.6 -1.6 compare
temperature shift Temperature shift 30_to_4; with MOPS -0.6 -2.9 compare
pH Growth at pH8 and (C) D-Glucose -0.5 -1.9 compare
carbon source 3-Hydroxydecanoic (C) -0.5 -2.0 compare
carbon source Valeric (C) -0.5 -1.7 compare
temperature Growth at 30C; with MOPS -0.5 -1.5 compare
carbon source Heptanoic (C) -0.5 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.5 -1.6 compare
temperature Growth at 25C; with MOPS -0.5 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.4 -1.8 compare
phage moi 100 Time6-phageFRS +0.4 +2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.4 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.0 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM +0.5 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.5 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +1.8 compare
phage P. putida Missley MOI 0.1 +0.6 +2.4 compare
nitrogen source Urea (N); with MOPS +0.7 +3.0 compare
carbon source 4-Methyl-2-oxopentanoic (C) +0.7 +2.9 compare