Fitness data for PP_3543 in Pseudomonas putida KT2440

Iron-sulfur cluster-binding protein
SEED: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -0.9 -1.9 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.7 -2.9 compare
carbon source acetate (C) -0.6 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -3.2 compare
carbon source Valerolactone (C) -0.5 -2.3 compare
pH Growth at pH6 and (C) Trisodium citrate -0.5 -2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.5 -2.2 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.4 -2.1 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -0.4 -1.9 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.4 -1.3 compare
nitrogen source nitrogen source nitrate 5mM -0.4 -2.1 compare
carbon source D-Glucose (C); with MOPS -0.4 -1.0 compare
pH pH 6 +0.4 +1.6 compare
carbon source carbon source Bisabolene 48.9 mM +0.4 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +1.5 compare
carbon source carbon source Glycerol 108.6 mM +0.4 +2.2 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.4 +1.5 compare
carbon source 4-Aminobutyric 10 mM (C) +0.5 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.8 compare