Fitness data for PP_3528 in Pseudomonas putida KT2440

putative ABC transporter, periplasmic substrate-binding protein
SEED: Alkanesulfonates-binding protein
KEGG: sulfonate/nitrate/taurine transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -3.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -4.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 -3.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -2.2 compare
carbon source ferulate (C); with MOPS -0.6 -1.9 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.6 -3.3 compare
carbon source 1,3-Butandiol (C) -0.5 -1.6 compare
carbon source Tween 20 (C) -0.5 -1.6 compare
nitrogen source NAG (N); with MOPS -0.5 -1.4 compare
carbon source acetate (C) -0.5 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -2.5 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -3.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.9 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.5 +2.3 compare
phage P. putida Sci small MOI 0.1 +0.7 +2.3 compare