Fitness data for PP_3503 in Pseudomonas putida KT2440

Sigma-54 dependent transcriptional regulator
SEED: Sigma-54 dependent transcriptional regulator

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.8 -4.3 compare
phage P. putida PUT 7 MOI 1 -0.9 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.8 -3.8 compare
nitrogen source NAG (N); with MOPS -0.7 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -2.3 compare
pH Growth at pH9 and (C) Trisodium citrate +0.6 +2.2 compare
nitrogen source Propiolactam (N) +0.6 +2.2 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.6 +2.1 compare
temperature Growth at 30C; with MOPS +0.7 +3.0 compare
pH pH 9 +0.7 +2.1 compare
pH Growth at pH6 and (C) D-Glucose +0.7 +2.5 compare
carbon source carbon source Bisabolol 45 mM +0.7 +2.7 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.7 +2.7 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.7 +2.5 compare
pH pH 8 +0.8 +2.6 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +0.8 +3.0 compare
carbon source L-Leucine (C) +0.9 +4.8 compare
carbon source carbon source D-Glucose 55.5 mM +0.9 +2.9 compare
pH pH 6 +1.0 +2.8 compare