Fitness data for PP_3488 in Pseudomonas putida KT2440

Sco1/SenC family protein
SEED: Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
phage P. putida South MOI 0.1 -1.1 -3.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 -1.5 compare
carbon source ferulate (C); with MOPS -0.9 -1.7 compare
stress R2A with Fusaric 240 ug/mL -0.8 -3.7 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.8 -1.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.8 -2.9 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -1.9 compare
pH Growth at pH7 and (C) Trisodium citrate -0.7 -1.8 compare
nitrogen source Urea (N) -0.7 -1.3 compare
stress NaCl stress 250 mM -0.7 -2.2 compare
carbon source Valerolactone (C) +0.7 +1.8 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.7 +1.6 compare
pH pH 8 +0.7 +1.9 compare
pH Growth at pH9 and (C) D-Glucose +0.7 +3.4 compare
pH pH 4 +0.7 +2.2 compare
stress R2A with Fusaric 240 ug/mL +0.7 +2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.7 +3.3 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.8 +2.6 compare
nitrogen source no extra (N); with MOPS +0.8 +3.0 compare