Fitness data for PP_3425 in Pseudomonas putida KT2440

Efflux transporter RND family, MFP subunit
SEED: Multidrug efflux membrane fusion protein MexE

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.4 -2.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 -2.7 compare
pH pH 8 -1.2 -3.8 compare
phage P. putida Sci small MOI 0.1 -1.1 -1.7 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.0 -3.1 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -1.0 -3.1 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.9 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9 -1.5 compare
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.8 -2.6 compare
carbon source Nonanoic (C) -0.7 -1.9 compare
phage P. putida Sci Big MOI 0.1 -0.7 -1.9 compare
toxin pUC18_phdP1_pSU18T_docP1 -0.7 -2.8 compare
carbon source carbon source Glycerol 108.6 mM -0.7 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 +1.4 compare
temperature shift Temperature shift 30_to_25 +0.6 +2.4 compare
nitrogen source NAG (N); with MOPS +0.7 +2.3 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. +0.7 +3.1 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.7 +3.4 compare
pH Growth at pH6 and (C) Trisodium citrate +0.7 +2.7 compare
carbon source Valeric (C) +0.8 +2.2 compare