Fitness data for PP_3424 in Pseudomonas putida KT2440

Type II secretion pathway protein XcpS
SEED: General secretion pathway protein F / Type II secretory pathway, component PulF / Type IV fimbrial assembly protein PilC
KEGG: general secretion pathway protein F

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.4 -2.2 compare
pH Valerolactone (C) pH 6.5 -1.1 -2.6 compare
r2a control R2A control -0.8 -2.4 compare
nitrogen source 2,6-diaminopimelic (N) -0.7 -2.0 compare
pH pH 9 -0.7 -2.3 compare
temperature shift Temperature shift 30_to_25 -0.7 -2.3 compare
pH Growth at pH6 and (C) D-Glucose -0.7 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 -2.5 compare
carbon source Trisodium citrate (C) -0.7 -1.8 compare
nitrogen source D-2-Aminobutyric (N) -0.7 -1.1 compare
phage P. putida South MOI 10 -0.7 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -1.5 compare
carbon source Ethyl decanoate and D-Glucose (C)s -0.6 -2.2 compare
temperature Growth at 25C +0.6 +1.3 compare
temperature Growth at 30C; with MOPS +0.6 +2.2 compare
carbon source L-Lysine (C) +0.6 +2.6 compare
carbon source Heptanoic (C) +0.6 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +2.7 compare