Fitness data for PP_3419 in Pseudomonas putida KT2440

Sigma-54 dependent transcriptional regulator/response regulator
SEED: Nitrogen regulation protein NR(I)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
carbon source ferulate (C); with MOPS -1.0 -2.5 compare
nitrogen source Urea (N) -1.0 -2.3 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.9 -2.6 compare
carbon source D-Glucose (C); with MOPS -0.9 -1.6 compare
nitrogen source NAG (N) -0.9 -3.6 compare
nitrogen source D-2-Aminobutyric (N) -0.9 -1.3 compare
carbon source D-Glucose (C); with MOPS -0.9 -2.8 compare
carbon source 3-Hydroxydecanoic (C) -0.9 -1.9 compare
pH Growth at pH7 and (C) Trisodium citrate -0.9 -2.2 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.9 -1.9 compare
temperature shift Temperature shift 30_to_4; with MOPS -0.8 -3.1 compare
temperature Growth at 25C -0.8 -1.9 compare
nitrogen source nitrogen source nitrite 0.5mM -0.8 -3.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -3.1 compare
pH Growth at pH8 and (C) D-Glucose -0.8 -2.0 compare
no phage control Time6-nophage -0.8 -3.1 compare
stress Growth with Chloride 500 mM; with MOPS -0.8 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.8 +2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.3 +4.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.5 +1.9 compare