Fitness data for PP_3412 in Pseudomonas putida KT2440

DNA-binding response regulator, LuxR family
SEED: Virulence factors putative positive transcription regulator bvgA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
nitrogen source 2,6-diaminopimelic (N) -1.0 -2.3 compare
phage P. putida Missley MOI 0.1 -1.0 -2.5 compare
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.8 -2.4 compare
pH D-Glucose (C) pH 7.5 -0.7 -2.3 compare
nitrogen source Propiolactam (N) -0.7 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.7 -2.5 compare
pH Growth at pH6 and (C) Trisodium citrate -0.6 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.6 -1.7 compare
nitrogen source Ammonium chloride (N) -0.6 -2.8 compare
stress MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM -0.6 -2.6 compare
stress MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL -0.6 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.3 compare
pH pH 9 +0.6 +1.9 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +0.6 +1.6 compare
carbon source Tween 20 (C) +0.7 +2.6 compare
temperature Growth at 30C +0.7 +2.8 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.8 +2.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +2.0 compare