Fitness data for PP_3405 in Pseudomonas putida KT2440

conserved membrane protein of unknown function
SEED: Transporter, LysE family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
pH pH 9 -0.6 -2.6 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.6 -1.9 compare
temperature shift Temperature shift 30_to_25 -0.6 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.5 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.6 compare
carbon source ferulate (C); with MOPS -0.5 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.7 compare
phage P. putida PUT 7 MOI 1 -0.5 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.4 -2.3 compare
carbon source carbon source 3-O-methyl-glucose 50 mM -0.4 -1.8 compare
carbon source 3-Hydroxypropionate (C) -0.4 -3.0 compare
carbon source carbon source D-Glucose 55.5 mM -0.4 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4 +2.5 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol +0.4 +2.3 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +1.9 compare
stress Growth with Chloride 500 mM; with MOPS +0.4 +2.4 compare
phage P. putida Sci small MOI 0.1 +0.5 +1.8 compare
temperature Growth at 25C +0.5 +2.1 compare
nitrogen source 2,6-diaminopimelic (N) +0.5 +1.8 compare