Fitness data for PP_3400 in Pseudomonas putida KT2440

alpha-ketoglutarate- and Fe(II)-dependent dioxygenase
SEED: Alkylated DNA repair protein AlkB
KEGG: alkylated DNA repair protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
pH Growth at pH7 and (C) Trisodium citrate -1.0 -1.7 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -1.0 -2.3 compare
carbon source D-Glucose (C) -1.0 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.0 -2.1 compare
carbon source D-Glucose (C); with MOPS -0.9 -1.9 compare
stress Growth with Chloride 200 mM -0.9 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.8 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.7 -1.6 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.7 +2.4 compare
pH pH 9 +0.7 +1.8 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.7 +2.1 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.8 +2.1 compare
nitrogen source NAG (N); with MOPS +0.8 +1.5 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.8 +1.9 compare
carbon source Valerolactone (C) +0.8 +2.7 compare
pH pH 6 +0.8 +2.1 compare
carbon source carbon source D-Glucose 55.5 mM +0.8 +2.2 compare
pH Growth at pH6 and (C) Trisodium citrate +0.8 +2.1 compare
phage P. putida Sci small MOI 0.1 +1.0 +2.0 compare
phage P. putida PUT 7 MOI 1 +1.1 +4.1 compare