Fitness data for PP_3394 in Pseudomonas putida KT2440

putative 3-hydroxy-3-methylglutaryl-CoA lyase
SEED: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
KEGG: hydroxymethylglutaryl-CoA lyase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source Tween 20 (C) -0.8 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 -1.8 compare
pH Growth at pH7 and (C) Trisodium citrate -0.7 -1.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM -0.7 -2.9 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.7 -2.4 compare
phage P. putida Sci small MOI 0.1 -0.7 -0.9 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.0 compare
pH pH 8 -0.6 -1.6 compare
carbon source carbon source 4-vinylphenol 0.1 mM -0.6 -1.7 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -1.3 compare
carbon source Myristic (C) -0.6 -1.5 compare
nitrogen source nitrogen source nitrate 20mM -0.6 -2.6 compare
carbon source ferulate (C); with MOPS -0.6 -1.2 compare
pH Growth at pH6 and (C) D-Glucose -0.6 -1.1 compare
carbon source DL-3-Hydroxyisobutyric (C) -0.6 -2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -1.9 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.6 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.6 +3.2 compare
carbon source L-Leucine (C) +0.6 +3.4 compare
carbon source D-Glucose (C) +0.6 +2.8 compare