Fitness data for PP_3346 in Pseudomonas putida KT2440

Nickel transporter ATP-binding protein
SEED: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3)
KEGG: peptide/nickel transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.2)


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group condition fitness t score  
phage P. putida Sci small MOI 0.1 -5.3 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -3.3 -2.1 compare
carbon source ferulate (C); with MOPS -2.3 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -2.1 -1.8 compare
pH Growth at pH6 and (C) D-Glucose -2.0 -2.0 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.9 -2.0 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol -1.8 -2.1 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.7 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 -2.8 compare
pH Valerolactone (C) pH 6.5 -1.4 -1.7 compare
nitrogen source Propiolactam (N) -1.4 -1.9 compare
temperature shift Temperature shift 30_to_25; with MOPS -1.4 -1.4 compare
phage P. putida Sci small MOI 0.1 -1.3 -1.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -1.2 -1.5 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -2.0 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +2.0 +6.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +2.1 +5.6 compare