Fitness data for PP_3344 in Pseudomonas putida KT2440

nickel ABC transporter permease subunit
SEED: Nickel transport system permease protein NikC (TC 3.A.1.5.3)
KEGG: peptide/nickel transport system permease protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -1.2 -2.7 compare
phage P. putida Missley MOI 0.1 -0.8 -1.8 compare
r2a control R2A control -0.8 -3.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -0.7 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.7 -1.9 compare
carbon source D-Glucose (C); with MOPS -0.7 -2.1 compare
nitrogen source nitrogen source nitrate 5mM -0.7 -1.9 compare
carbon source D-Glucose (C) -0.6 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.2 compare
phage P. putida Sci small MOI 0.1 -0.6 -1.6 compare
carbon source carbon source Bisabolol 45 mM +0.6 +1.6 compare
nitrogen source Ammonium chloride (N) +0.6 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.4 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.7 +2.9 compare
pH pH 6 +0.7 +1.6 compare
stress Growth with Chloride 200 mM; with MOPS +0.7 +2.4 compare
nitrogen source D-2-Aminobutyric (N) +0.7 +2.1 compare
carbon source Valerolactone (C) +0.7 +2.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +2.7 compare
pH Growth at pH7 and (C) Trisodium citrate +0.8 +1.4 compare