Fitness data for PP_3285 in Pseudomonas putida KT2440

detoxifying thioesterase of the phenylacetate degradation pathway
SEED: Phenylacetic acid degradation protein PaaY
KEGG: carnitine operon protein CaiE

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
carbon source Phenylacetic (C) -7.4 -5.1 compare
carbon source Phenylacetic (C) -4.6 -7.4 compare
nitrogen source D-2-Aminobutyric (N) -1.5 -3.4 compare
pH Growth at pH6 and (C) Trisodium citrate -1.4 -2.8 compare
nitrogen source 2,6-diaminopimelic (N) -0.9 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.8 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.8 -1.4 compare
phage P. putida PUT 7 MOI 1 -0.8 -1.6 compare
stress Growth with Chloride 200 mM -0.8 -1.6 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -2.4 compare
nitrogen source nitrogen source nitrite 1mM -0.7 -1.6 compare
carbon source Valeric (C) -0.7 -1.8 compare
nitrogen source D-2-Aminobutyric (N) -0.7 -1.9 compare
carbon source 4-Hydroxyvalerate (C) (40mM) -0.7 -1.6 compare
nitrogen source Ammonium chloride (N) -0.7 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.0 compare
carbon source Delta-Decalactone (C) +0.7 +2.6 compare
carbon source Valeric (C) +0.8 +5.3 compare
carbon source ferulate (C); with MOPS +0.8 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +1.0 +3.0 compare