Fitness data for PP_3267 in Pseudomonas putida KT2440

putative Clp protease
SEED: Protease subunit of ATP-dependent Clp proteases

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -1.2 -2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.1 -2.8 compare
phage P. putida Sci small MOI 0.1 -1.1 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 -2.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.8 -2.2 compare
carbon source Valeric (C) -0.8 -2.1 compare
phage P. putida Sci Big MOI 0.1 -0.7 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.7 -1.5 compare
stress NaCl stress 250 mM -0.6 -2.6 compare
carbon source D-Glucose (C); with MOPS -0.6 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.6 -2.3 compare
temperature shift Temperature shift 30_to_25 -0.6 -1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -2.1 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.5 -2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.5 -1.8 compare
nitrogen source 2,6-diaminopimelic (N) -0.5 -1.3 compare
carbon source D-Glucose (C); with MOPS -0.5 -1.7 compare
carbon source carbon source 3-O-methyl-glucose 10 mM +0.5 +1.3 compare
carbon source D-Glucose (C) with 20AA_mix_minus_Cys +0.5 +2.1 compare
pH D-Glucose (C) pH 6.5 +0.5 +1.8 compare