Fitness data for PP_3255 in Pseudomonas putida KT2440

non-homologous end joining protein
SEED: Ku domain protein
KEGG: DNA end-binding protein Ku

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
pH Growth at pH7 and (C) Trisodium citrate -1.0 -3.2 compare
phage P. putida Missley MOI 0.1 -0.7 -2.3 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.7 -2.9 compare
phage P. putida PUT 7 MOI 1 -0.7 -2.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 -2.5 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels -0.6 -2.2 compare
temperature shift Temperature shift 30_to_34; with MOPS -0.5 -2.3 compare
carbon source Crotonic (C) -0.5 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5 -2.3 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 -3.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.3 compare
stress R2A with Fusaric 240 ug/mL -0.5 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -1.8 compare
carbon source DL-2-Aminoadipic 10 mM (C) +0.4 +2.4 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM +0.4 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.6 compare
pH Valerolactone (C) pH 6.5 +0.5 +2.9 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +2.0 compare
pH pH 9 +0.6 +1.9 compare