Fitness data for PP_3223 in Pseudomonas putida KT2440

ABC transporter, periplasmic binding protein
SEED: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
KEGG: peptide/nickel transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.8 -2.5 compare
phage P. putida Sci small MOI 0.1 -0.6 -1.8 compare
carbon source Delta-Decalactone (C) -0.5 -2.7 compare
carbon source ferulate (C); with MOPS -0.5 -2.1 compare
nitrogen source Imidazole (N) -0.4 -2.8 compare
nitrogen source NAG (N) -0.4 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.4 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -2.3 compare
carbon source Acetate Carbon Source (20mM) -0.4 -2.6 compare
pH Growth at pH9 and (C) D-Glucose -0.4 -2.2 compare
carbon source D-Glucose (C) -0.4 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.4 -2.2 compare
stress Growth with Chloride 500 mM; with MOPS -0.4 -1.9 compare
temperature shift Temperature shift 10_to_25; with MOPS -0.3 -1.6 compare
carbon source 4-Methyl-2-oxopentanoic (C) -0.3 -1.7 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol -0.3 -1.5 compare
carbon source Nonanoic (C) +0.4 +2.0 compare
carbon source 4-Methyl-2-oxopentanoic (C) +0.4 +2.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +2.6 compare