Fitness data for PP_3220 in Pseudomonas putida KT2440

ABC transporter, ATP-binding protein
SEED: Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)
KEGG: peptide/nickel transport system ATP-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.7 -2.2 compare
carbon source Nonanoic (C) -0.6 -2.6 compare
pH Growth at pH7 and (C) D-Glucose -0.6 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.6 -2.8 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.5 -1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -1.6 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.5 -1.5 compare
phage PUT8 MOI 0.1 -0.5 -2.1 compare
carbon source 3-Hydroxydecanoic (C) -0.5 -2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.5 -2.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.4 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.0 compare
carbon source ferulate (C); with MOPS +0.4 +1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +2.1 compare
nitrogen source 2,6-diaminopimelic (N) +0.5 +1.6 compare
phage P. putida Sci small MOI 0.1 +0.5 +1.4 compare
carbon source 4-Methyl-2-oxopentanoic (C) +0.5 +3.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +2.4 compare
nitrogen source nitrogen source nitrite 1mM +0.6 +2.9 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.4 compare