Fitness data for PP_3168 in Pseudomonas putida KT2440

porin-like protein
SEED: benzoate-specific porin

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 -2.7 compare
phage P. putida Missley MOI 0.1 -0.6 -2.4 compare
phage P. putida Sci small MOI 0.1 -0.5 -1.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.4 compare
nitrogen source D-2-Aminobutyric (N) -0.4 -1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.4 -1.8 compare
stress R2A with Fusaric 240 ug/mL -0.3 -2.1 compare
pH Growth at pH6 and (C) D-Glucose -0.3 -1.1 compare
nitrogen source Propandiamine (N) -0.3 -1.5 compare
nitrogen source nitrogen source nitrate 5mM -0.3 -1.7 compare
temperature Growth at 25C; with MOPS -0.3 -1.8 compare
phage P. putida South MOI 10 -0.3 -1.7 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. -0.3 -1.8 compare
stress Growth with Chloride 500 mM; with MOPS -0.3 -1.7 compare
carbon source 3-Hydroxydecanoic (C) -0.3 -1.6 compare
nitrogen source nitrite (N) +0.3 +1.6 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM +0.3 +2.0 compare
temperature shift Temperature shift 10_to_30; with MOPS +0.3 +1.7 compare
carbon source ferulate (C); with MOPS +0.3 +1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.3 +1.9 compare