Fitness data for PP_3152 in Pseudomonas putida KT2440

putative DNA-binding transcriptional regulator, LysR-type
SEED: LysR family transcriptional regulator YneJ

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source Valerolactam 10 mM (C) -1.1 -3.8 compare
carbon source 5-Aminovaleric 10 mM (C) -1.0 -4.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -3.1 compare
phage P. putida South MOI 10 -0.6 -1.8 compare
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.6 -2.5 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.6 -1.8 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -2.3 compare
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.6 -2.7 compare
pH Growth at pH6 and (C) Trisodium citrate -0.5 -2.2 compare
stress Geraniol 1 vol% -0.5 -2.5 compare
carbon source Delta-Nonalactone (C) -0.5 -2.3 compare
nitrogen source nitrate (N) +0.5 +2.0 compare
nitrogen source no extra (N); with MOPS +0.5 +2.0 compare
temperature shift Temperature shift 10_to_34; with MOPS +0.5 +3.4 compare
temperature shift Temperature shift 30_to_34; with MOPS +0.5 +2.3 compare
temperature shift Temperature shift 10_to_30 +0.5 +2.2 compare
phage P. putida Sci small MOI 0.1 +0.5 +1.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 +2.4 compare
nitrogen source D-2-Aminobutyric (N) +0.6 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +1.5 compare