Fitness data for PP_3116 in Pseudomonas putida KT2440

transcriptional repressor
SEED: SOS-response repressor and protease LexA (EC 3.4.21.88)
KEGG: repressor LexA

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.5 -3.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -2.6 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.2 -1.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.1 -1.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.1 -2.8 compare
carbon source L-Leucine (C) -1.0 -1.1 compare
time series Timeseries; MAX condition; Bioreplicate 1; Time 4hrs; Measurement -1.0 -3.3 compare
pH Growth at pH9 and (C) Trisodium citrate -0.9 -1.3 compare
temperature Growth at 30C; with MOPS -0.9 -1.2 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 -1.3 compare
phage moi 100 Time6-phageFRS -0.8 -1.8 compare
time series Timeseries; MAX condition; Bioreplicate 1; Time 5hrs; Measurement -0.8 -3.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs +0.8 +4.0 compare
pH Growth at pH6 and (C) Trisodium citrate +0.9 +2.1 compare
temperature shift Temperature shift 30_to_4; with MOPS +1.0 +3.6 compare
nitrogen source Urea (N) +1.0 +3.0 compare
phage PUT 8 MOI 1 +1.0 +3.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +1.2 +3.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 +1.6 compare