Fitness data for PP_3090 in Pseudomonas putida KT2440

OmpA domain protein
SEED: OmpA domain protein
KEGG: type VI secretion system protein ImpL

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -0.7 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.5 -2.5 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.5 -2.6 compare
carbon source ferulate (C); with MOPS -0.5 -2.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.7 compare
phage P. putida PUT 7 MOI 1 -0.4 -2.0 compare
nitrogen source nitrite (N) -0.3 -2.4 compare
phage P. putida Sci small MOI 0.1 -0.3 -1.3 compare
phage P. put South MOI 10 -0.3 -1.5 compare
phage P. putida Sci Big MOI 0.1 -0.3 -1.3 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -1.5 compare
nitrogen source Hydantoin (N) +0.3 +2.2 compare
pH Growth at pH6 and (C) D-Glucose +0.3 +1.7 compare
carbon source carbon source D-Glucose 55.5 mM +0.3 +1.8 compare
stress Isobutyl alcohol 0.6 vol% +0.4 +3.0 compare
stress Butanol 0.6 vol% +0.4 +2.7 compare
carbon source 5-Hydroxydodecanoate (C) +0.4 +3.3 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.4 +2.5 compare
stress 1-Pentanol 0.3 vol% +0.5 +3.4 compare