Fitness data for PP_3047 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: elements of external origin; phage-related functions and prophages

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -1.5 -4.2 compare
phage P. putida Sci small MOI 0.1 -1.1 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9 -4.1 compare
carbon source L-Leucine (C) -0.6 -2.4 compare
phage P. putida Sci small MOI 0.1 -0.5 -1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -2.0 compare
pH Growth at pH9 and (C) Trisodium citrate -0.4 -1.8 compare
phage P. putida Sci Big MOI 0.1 -0.4 -1.7 compare
pH pH 6 -0.4 -1.9 compare
carbon source Valerolactone (C) -0.4 -2.1 compare
nitrogen source Ammonium chloride and TNT (N) -0.3 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.7 compare
phage PUT8 MOI 0.1 +0.4 +1.9 compare
temperature shift Temperature shift 10_to_34; with MOPS +0.4 +2.4 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. +0.4 +2.0 compare
phage PUT 8 MOI 1 +0.4 +1.7 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 +2.0 compare
temperature shift Temperature shift 10_to_25; with MOPS +0.4 +1.9 compare