Fitness data for PP_3005 in Pseudomonas putida KT2440

conserved protein of unknown function
SEED: Probable transmembrane protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
nitrogen source D-2-Aminobutyric (N) -1.6 -3.2 compare
nitrogen source 2,6-diaminopimelic (N) -1.3 -2.3 compare
carbon source ferulate (C); with MOPS -1.0 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.0 -3.0 compare
temperature Growth at 25C -0.9 -2.3 compare
temperature shift Temperature shift 30_to_21; with MOPS -0.9 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.8 -1.6 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.7 -2.7 compare
carbon source ferulate (C); with MOPS -0.7 -2.2 compare
carbon source Delta-Decalactone (C) -0.7 -2.9 compare
nitrogen source Propiolactam (N) -0.7 -2.4 compare
phage PUT 8 MOI 1 -0.7 -2.0 compare
nitrogen source NAG (N); with MOPS -0.7 -2.1 compare
time series Timeseries; MIN condition; Bioreplicate 1; Time 7hrs; Measurement -0.7 -2.9 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.7 -2.8 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.7 -1.7 compare
pH Growth at pH7 and (C) Trisodium citrate -0.7 -1.8 compare
temperature shift Temperature shift 10_to_25; with MOPS -0.7 -1.5 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.6 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.9 compare