Fitness data for PP_2939 in Pseudomonas putida KT2440

toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor
SEED: YoeB toxin protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.8)


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group condition fitness t score  
temperature shift Temperature shift 30_to_34; with MOPS -1.8 -3.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 -2.2 compare
nitrogen source nitrite (N) -1.1 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs -1.1 -2.0 compare
temperature shift Temperature shift 10_to_34; with MOPS -1.0 -3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -1.0 -2.6 compare
nitrogen source Urea (N) -1.0 -2.0 compare
phage P. putida PUT10 MOI 0.1 -0.9 -4.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.9 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.9 -1.5 compare
pH Growth at pH6 and (C) Trisodium citrate -0.9 -1.3 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM -0.9 -2.6 compare
pH Growth at pH6 and (C) D-Glucose -0.8 -0.9 compare
carbon source carbon source 4-vinylphenol 0.01 mM +0.9 +2.4 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.9 +2.5 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM +0.9 +3.8 compare
pH pH 9 +1.0 +2.6 compare
phage PUT 8 MOI 1 +1.0 +1.9 compare
pH pH 7 +1.2 +3.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +1.2 +1.8 compare