Fitness data for PP_2920 in Pseudomonas putida KT2440

putative nitrogen-containing compound degradation enzyme
SEED: Lactam utilization protein LamB
KEGG: UPF0271 protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
nitrogen source Butyrolactam (N) -4.7 -11.9 compare
nitrogen source Propiolactam (N) -4.4 -8.4 compare
nitrogen source Butyrolactam (N) -4.3 -11.6 compare
nitrogen source Propiolactam (N) -3.1 -5.9 compare
nitrogen source 2,6-diaminopimelic (N) -0.8 -2.0 compare
pH Growth at pH7 and (C) D-Glucose -0.7 -1.4 compare
nitrogen source Valerolactam (N) -0.6 -3.8 compare
nitrogen source Valerolactam (N) -0.6 -3.4 compare
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -0.6 -2.8 compare
carbon source 5-Aminovaleric 10 mM (C) -0.6 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -0.5 -1.4 compare
pH Growth at pH7 and (C) D-Glucose +0.6 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.6 +2.0 compare
nitrogen source D-2-Aminobutyric (N) +0.6 +1.7 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.7 +1.7 compare
carbon source D-Glucose (C) +0.7 +2.8 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +1.3 compare
phage P. putida Sci small MOI 0.1 +0.8 +2.4 compare
nitrogen source D-2-Aminobutyric (N) +0.8 +3.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.1 +2.0 compare