Fitness data for PP_2909 in Pseudomonas putida KT2440

glutarate hydroxylase (from data)
Original annotation: carbon starvation induced protein
SEED: Carbon starvation induced protein CsiD

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source Glutaric (C) -5.2 -8.0 compare
carbon source Glutaric (C) -5.0 -7.6 compare
carbon source Valerolactam 10 mM (C) -3.4 -8.4 compare
carbon source 5-Aminovaleric 10 mM (C) -2.2 -7.3 compare
carbon source 5-Aminovaleric 10 mM (C) -2.2 -5.7 compare
carbon source Valerolactam (C) -2.0 -6.6 compare
nitrogen source 5-Aminovaleric (N) -1.4 -8.4 compare
nitrogen source 5-Aminovaleric (N) -1.3 -7.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.0 -2.6 compare
carbon source 1,5-Pentanediol (C) -0.8 -3.9 compare
phage P. putida Missley MOI 0.1 -0.7 -1.3 compare
nitrogen source NAG (N); with MOPS -0.7 -1.7 compare
phage PUT8 MOI 0.1 -0.7 -1.7 compare
nitrogen source NAG (N) -0.6 -2.5 compare
carbon source L-Phenylalanine 5 mM (C) -0.6 -3.0 compare
nitrogen source Urea (N) -0.6 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.7 compare
carbon source Valerolactone (C) +0.6 +2.4 compare
carbon source Valerolactone (C) +0.6 +2.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.9 +2.2 compare