Fitness data for PP_2873 in Pseudomonas putida KT2440

conserved protein of unknown function, UPF0145 family
SEED: PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
pH Growth at pH6 and (C) D-Glucose -1.8 -3.4 compare
phage P. putida PUT 7 MOI 1 -1.5 -2.5 compare
stress R2A with Polymyxin B sulfate 0.001 mg/ml -1.4 -3.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.4 -2.4 compare
nitrogen source nitrogen source nitrite 1mM -1.2 -2.1 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -1.1 -2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.0 -2.0 compare
nitrogen source nitrogen source nitrite 0.5mM -1.0 -1.6 compare
nitrogen source nitrite (N) -0.9 -2.5 compare
reactor 40hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.9 -2.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 -2.2 compare
phage PUT8 MOI 0.1 -0.8 -2.2 compare
pH Growth at pH6 and (C) D-Glucose -0.8 -1.1 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -2.3 compare
carbon source D-Glucose (C); with MOPS +0.7 +2.9 compare
pH Growth at pH6 and (C) Trisodium citrate +0.7 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +1.2 compare
nitrogen source 2,6-diaminopimelic (N) +0.9 +2.8 compare
temperature shift Temperature shift 10_to_30 +0.9 +3.2 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.4 compare