Fitness data for PP_2870 in Pseudomonas putida KT2440

putative spermidine/putrescine-binding periplasmic protein
SEED: ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)
KEGG: putative spermidine/putrescine transport system substrate-binding protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
phage P. putida Sci Big MOI 0.1 -0.6 -1.5 compare
nitrogen source nitrogen source nitrite 0.5mM -0.5 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.5 -2.1 compare
phage PUT8 MOI 0.1 -0.4 -2.8 compare
phage P. putida PUT 7 MOI 1 -0.4 -1.7 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -1.9 compare
nitrogen source D-2-Aminobutyric (N) -0.4 -1.8 compare
carbon source Vanillin (C) -0.4 -2.7 compare
carbon source carbon source Bisabolol 45 mM +0.4 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +1.7 compare
dilutelb LB 0.1x with 55.5 mM D-Glucose +0.4 +2.4 compare
nitrogen source nitrogen source nitrite 1mM +0.4 +1.9 compare
pH pH 8 +0.4 +2.2 compare
phage P. putida Sci small MOI 0.1 +0.4 +1.7 compare
carbon source carbon source 4-vinylphenol 0.1 mM +0.4 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.5 compare
pH Growth at pH7 and (C) Trisodium citrate +0.4 +2.0 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.5 +2.4 compare
carbon source carbon source 3-O-methyl-glucose 50 mM +0.5 +2.2 compare
pH Growth at pH7 and (C) Trisodium citrate +0.5 +2.7 compare