Fitness data for PP_2865 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: Transcriptional regulator, LysR family

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida PUT 7 MOI 1 -0.8 -1.9 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay -0.6 -3.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.6 compare
carbon source D-Lysine 10 mM (C) -0.4 -2.1 compare
nitrogen source Urea (N); with MOPS -0.4 -1.7 compare
nitrogen source Ammonium chloride and TNT (N) -0.4 -2.9 compare
carbon source DL-2-Aminoadipic 10 mM (C) -0.4 -2.1 compare
pH Growth at pH7 and (C) D-Glucose -0.3 -1.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -1.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -1.4 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM +0.3 +1.7 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.3 compare
carbon source pyruvate (C) +0.4 +2.2 compare
carbon source 1,3-Butandiol (C) +0.4 +2.1 compare
phage P. putida South MOI 10 +0.4 +2.0 compare
phage P. putida Sci Big MOI 0.1 +0.4 +1.5 compare
carbon source 4-Aminobutyric 10 mM (C) +0.4 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.4 +1.9 compare
temperature shift Temperature shift 30_to_21; with MOPS +0.5 +2.5 compare
nitrogen source NAG (N); with MOPS +0.6 +2.2 compare